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2009 Publications

 Advances in Computational Astrophysics. A. C. Calder, and R. T. Kouzes. Introduction to special issue Computational Astrophysics, CiSE, 11 No. 2, 15, 2009

Arnout van de Rijt, Michael W. Macy, and David Siegel. 2009. "Comment: Neighborhood Chance and Neighborhood Change".American Journal of Sociology 114(4):1166-80.

Chandrajit Bajaj, Rezaul Alam Chowdhury, and Muhibur Rasheed, "A Dynamic Data Structure for Flexible Molecular Maintenance and Informatics",Proceedings of the ACM Symposium on Solid and Physical Modeling (SPM 2009), San Francisco, California, pp. 259-270, 2009.

Chandrajit Bajaj, Rezaul Alam Chowdhury, and Vinay Siddavanahalli, "F3Dock: A Fast, Flexible and Fourier Based Approach to Protein-Protein Docking", The University of Texas at Austin, The Institute of Computational Engineering and Sciences (ICES), Report 08-01, January 2008 (Updated: April 2009), 27 pages.

D. Wang, B. L. Clark and X. Jiao. An Analysis and Comparison of Parameterization-Based Computation of Differential Quantities for Discrete Surfaces, Computer Aided Geometric Design. Vol 26(5), pp. 510-527, 2009. DOI: 10.1016/j.cagd.2009.02.006.

Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Progenitor 22Ne Content on Dynamics. D. M. Townsley, A. P. Jackson, A. C. Calder, D. A. Chamulak, E. F. Brown, and F. X. Timmes. ApJ, 701, 1582, 2009

Gönül Doğan, Marcel van Assen, Arnout van de Rijt, and Vincent Buskens. 2009. “The Stability of Exchange Networks.” Social Networks 31(2):118-25.

Hu C.H., Oganov A.R., Lyakhov A.O., Zhou H.Y., Hafner J. (2009). Insulating states of LiBeH3 under extreme compression. Phys. Rev. B79, 134116.

J. P. Pereira, C. A. Duarte, D. Guoy, and X. Jiao, Hp-Generalized FEM and crack surface representation for non-planar 3-D cracks, International Journal for Numerical Methods in Engineering, Vol 77(5), pp. 601-633, 2009. DOI: 10.1002/nme.2419.

J. P. Pereira, C. A. Duarte, X. Jiao and D. Guoy. Generalized Finite Element Method Enrichment Functions for Curved Singularities in 3D Fracture Mechanics Problems. Computational Mechanics, Vol 44(1), pp. 73–92, 2009. DOI: DOI: 10.1007/s00466-008-0356-1.

Khairoutdinov M. F., S. K. Krueger, C.-H. Moeng, P. A. Bogenschutz, and D. A Randall, 2009: Large-eddy simulation of maritime deep tropical convection, J. Adv. Model. Earth Syst., Vol. 1, Art. #15, 13 pp., doi:10.3894/JAMES.2009.1.15

Kim, D., K. Sperber, W. Stern, D. Waliser, I.-S. Kang, E. Maloney, S. Schubert, W. Wang, K. Weickmann, J. Benedict, M. Khairoutdinov, M.-I. Lee, R. Neale, M. Suarez, K. Thayer-Calder, and G. Zhang, 2009: Application of MJO Simulation Diagnostics to Climate Models, J. Climate, 22, 6413-6436.

Li Q., Ma Y., Oganov A.R., Wang H., Wang H., Xu Y., Cui T., Mao H.-K., Zou G. (2009). Superhard monoclinic polymorph of carbon. Phys. Rev. Lett. 102, 175506.

Li Q., Wang M., Oganov A.R., Cui T., Ma Y., Zou G. (2009). Rhombohedral superhard structure of BC2N. J. Appl. Phys. 105, 053514.

Ma Y., Eremets M.I., Oganov A.R., Xie Y., Trojan I., Medvedev S., Lyakhov A.O., Valle M., Prakapenka V. (2009). Transparent dense sodium. Nature 458, 182-185.

Ma Y., Oganov A.R., Xie Y., Li Z., Kotakoski J. (2009). Novel high pressure structures of polymeric nitrogen. Phys. Rev. Lett. 102, 065501.

Ma Y., Wang Y., Oganov A.R. (2009). Absence of superconductivity in the novel high-pressure polymorph of MgB2. Phys. Rev. B79, 054101.

Mapes, B. E., J. Bacmeister, M. Khairoutdinov, C. Hannay, M. Zhao, 2009: Virtual field campaigns on deep tropical convection in climate models J. Climate, 22, 244-257.

Martinez-Canales M., Oganov A.R., Lyakhov A., Ma Y., Bergara A. (2009). Novel structures of silane under pressure. Phys. Rev. Lett. 102, 087005.

Melting the world's smallest raindrop M.V. Fernandez-Serra, Physics 2, 67 (2009).

Moeng C. H., M. A. LeMone, M. F. Khairoutdinov, S. K. Krueger, P. A. Bogenschutz, and D. A. Randall, 2009: The tropical marine boundary layer under a deep convection system: a large-eddy simulation study, J. Adv. Model. Earth Syst., Vol. 1, Art. #16, 13 pp., doi:10.3894/JAMES.2009.1.16

Oganov A.R., Chen J., Gatti C., Ma Y.-Z., Ma Y.-M., Glass C.W., Liu Z., Yu T., Kurakevych O.O., Solozhenko V.L. (2009). Ionic high-pressure form of elemental boron. Nature 457, 863-867.

Oganov A.R., Solozhenko V.L. (2009). Boron: a hunt for superhard polymorphs. J. Superhard Materials 31, 285-291.

Oganov A.R., Valle M. (2009). How to quantify energy landscapes of solids. J. Chem. Phys. 130, 104504.

Rezaul Alam Chowdhury, Francesco Silvestri, Brandon Blakeley, and Vijaya Ramachandran, "Oblivious Algorithms for Multicores and Network of Processors", The University of Texas at Austin, Department of Computer Sciences, TR-09-19, July 2009, 40 pages.

Schönborn S., Goedecker S., Roy S., Oganov A.R. (2009). The performance of minima hopping and evolutionary algorithms for cluster structure prediction. J. Chem. Phys. 130, 144108.

V. Dyedov, D. R. Einstein, X. Jiao, A. P. Kuprat, J. P. Carson and F. del Pin, Variational Generation of Prismatic Boundary-Layer Meshes for Biomedical Computing, International Journal for Numerical Methods in Engineering. Vol 79(8), pp. 907–945, 2009. DOI 10.1002/nme.2583.

"Wang H., Li Q., Li Y., Cui T., Oganov A.R., Ma Y. (2009). Ultra-incompressible phases of tungsten dinitride predicted from first principles. Phys. Rev. B79, 132109. "

X. Jiao, D. R. Einstein, V. Dyedov and J. P. Carson, Automatic Identification and Truncation of Boundary Outlets in Complex Imaging-Derived Biomedical Geometries, Medical & Biological Engineering & Computing, Vol 47(9), pp. 989-999, 2009. DOI 10.1007/s11517-009-0501-9.

Xu Y., Tse J.S., Oganov A.R., Cui T., Wang H., Ma Y., Zou G. (2009). Superconducting high-pressure phase of cesium iodide. Phys. Rev. B79, 144110.

Zurek E., Hoffmann R., Ashcroft N.W., Oganov A.R., Lyakhov A.O. (2009). A little bit of lithium does a lot for hydrogen. Proc. Natl. Acad. Sci. 106, 17640-17643.

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