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2007 Publications

A. Jain and X. Jiao, Overlaying Surface Meshes: Extension and Parallelization. In Proceedings of 16th International Meshing Roundtable, Seattle, WA, October 2007.

B. Kim, Y. Liu, I. Llamas, X. Jiao, and J. Rossignac, Simulation of Bubbles in Foam with the Volume Control Method, ACM Transactions on Graphics, Vol 26(3), 2007. DOI: 10.1145/1276377.1276500.

Capturing the Fire: Flame Energetics and Neutronization for Type Ia Supernovae. A. C. Calder, D. M. Townsley, O. E. B. Messer, I. Seitenzahl, F. Peng, E. F. Brown, N. Vlaidimirova, J. Truran, and D. Q. Lamb. ApJ, 656, 313, 2007

D. Guoy, T. Wilmarth, X. Jiao, et al., Parallel Mesh Adaptation for Highly Evolving Geometries with Application to Solid Propellant Rockets, In Proceedings of 16th International Meshing Roundtable, Seattle, WA, October 2007.

DeMott, C. A., D. A. Randall, and M. Khairoutdinov, 2007: Convective precipitation variability as a tool for general circulation model analysis. J. Climate., 20, 91–112.

Dorogokupets P.I., Oganov A.R. (2007). Ruby, metals, and MgO as alternative pressure scales: A semiempirical description of shock-wave, ultrasonic, x-ray, and thermochemical data at high temperatures and pressures. Phys. Rev. B75, art. 024115.

Flame Evolution During Type Ia Supernovae and the Deflagration Phase in the Gravitationally Confined Detonation Scenario. D. M. Townsley, A. C. Calder, S. M. Asida, I. Seitenzahl, F. Peng, N. Vladimirova, D. Q. Lamb, and J. Truran. ApJ, 668, 1118, 2007

Glass C.W., Oganov A.R. (2007). Crystal structure prediction with evolutionary algorithms. IUCr Commission on Powder Diffraction Newsletter 35, 9-12 (June 2007).

Hassdenteufel K.H., Oganov A.R., Steurer W., Katrich S. (2007). Ab initio study of the W-phase of Al-Co-Ni, an approximant of the decagonal Al-Co-Ni quasicrystal. Phys. Rev. B75, art. 144115.

J.-C. Huang, X. Jiao, R. M. Fujimoto, and H. Zha, DAG-Guided Parallel Asynchronous Variational Integrators with Super-Elements, In Summer Computer Simulation Conference, San Diego, CA, July 2007.

Ma Y.-M., Oganov A.R., Glass C.W. (2007). Structure of the metallic zeta-phase of oxygen and isosymmetric nature of the epsilon-zeta phase transition: Ab initio simulations. Phys. Rev. B76, art. 064101.

Marcel van Assen and Arnout van de Rijt. 2007. “Dynamic Exchange Networks.” Social Networks 29(2):266-78.

"Martonák R., Donadio D., Oganov A.R., Parrinello M. (2007). 4- to 6- coordinated silica: transformation pathways from metadynamics. Phys. Rev. B76, art. 014120."

Martonak R., Oganov A.R., Glass C.W. (2007). Crystal structure prediction and simulations of structural transformations: metadynamics and evolutionary algorithms. Phase Transitions 80, 277-298.

Mo Chen, Rezaul Alam Chowdhury, Vijaya Ramachandran, David Lan Roche, and Lingling Tong, "Priority Queues and Dijkstra's Algorithm", The University of Texas at Austin, Department of Computer Sciences, TR-07-54, Oct. 2007, 25 pages.

New insights in to the single-mode Rayleigh-Taylor instability. P. Ramaprabhu, G. Dimonte, A. C. Calder, and B. Fryxell, in Proceedings of the Tenth International Workshop on The Physics of Compressible Turbulent Mixing, eds. M. Legrand and M Vandenboomgaerde. Bruy`eres-le-Chˆatel: Commissariat `a l’Energie Atomique, 2007, pp. 309-313. Published electronically at

" Oganov A.R. (2007). Thermodynamics, phase transitions, equations of state and elasticity of minerals at high pressures and temperatures. In: Treatise on Geophysics, vol. 2 (Mineral Physics, edited by G.D. Price), 121-152."

Oganov A.R., Ma Y., Glass C.W., Valle M. (2007). Evolutionary crystal structure prediction: overview of the USPEX method and some of its applications. Psi-k Newsletter, number 84, Highlight of the Month, 142-171.

Preliminary Results of Three-Dimensional Simulations of the Deflagration Phase of the Gravitationally Confined Detonation Model of Type Ia Supernovae. G. C. Jordan IV, R. T. Fisher, D. M. Townsley, A. C. Calder, C. Graziani, S. M. Asida, D. Q. Lamb, and J. W. Truran, in Numerical Modeling of Space Plasma Flows: Astronum-2007 ASP Conference Series, Volume 385, Proceedings of the Conference held 10-15 June, 2007, Paris, France. N. V. Pogorelov, E. Audit, G. P. Zank, eds. San Francisco: Astronomical Society of the Pacific., p. 97

Rezaul Alam Chowdhury and Vijaya Ramachandran, "The Cache-Oblivious Gaussian Elimination Paradigm - Theoretical Framework, Parallelization and Experimental Evaluation", Proceedings of the 19th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA 2007), San Diego, California, pp. 71-80, 2007 (Invited to Theory of Computing Systems Special Issue for SPAA'07).

Rezaul Alam Chowdhury, Hai-Son Le, and Vijaya Ramachandran, "Efficient Cache-Oblivious String Algorithms for Bioinformatics", The University of Texas at Austin, Department of Computer Sciences, TR-07-03, Feb. 2007, 26 pages.

Type Ia Supernovae: Energetics, Neutronization, and Nucleosynthesis. J. W. Truran, A. C. Calder, D. M. Townsley, I. R. Seitenzahl, N. Vladimirova, D. Q. Lamb, and E. F. Brown. in The Multicoloured Landscape of Compact Objects and their Explosive Origins, L. Burderi et al. eds., AIP Conference Proceedings, Volume 924, 2007, pp. 203-209.

X. Jiao, Face Offsetting: A Unified Framework for Explicit Moving Interfaces. Journal of Computational Physics, Vol 220(2), pages 612–625, 2007. DOI: 10.1016/

X. Jiao, N.R. Bayyana, and H. Zha, Optimizing Surface Triangulation via Near Isometry with Reference Meshes. In Y. Shi et al. (Eds.) Computational Science – ICCS 2007, Part I, LNCS 4487, Beijing, May 2007.

Xie Y., Tse J.S., Cui T., Oganov A.R., He Z., Ma Y., Zou G. (2007). Electronic and phonon instabilities in face-centered cubic alkali metals under pressure. Phys. Rev. B75, art. 064102.

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